IL_8XSY_142

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8XSY|1|L5|G|4522, 8XSY|1|L5|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSY_142 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0416

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8XSY|1|L5|C|4456
8XSY|1|L5|U|4457
8XSY|1|L5|C|4458
*
8XSY|1|L5|G|4520
8XSY|1|L5|U|4521
8XSY|1|L5|G|4522
8XSY|1|L5|A|4523
8XSY|1|L5|G|4524

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23