IL_8XSY_153

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

8XSY|1|L5|U|4634, 8XSY|1|L5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSY_153 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2026

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8XSY|1|L5|U|4632
8XSY|1|L5|G|4633
8XSY|1|L5|U|4634
8XSY|1|L5|A|4635
8XSY|1|L5|U|4636
8XSY|1|L5|G|4637
*
8XSY|1|L5|C|4662
8XSY|1|L5|G|4663
8XSY|1|L5|A|4664
8XSY|1|L5|A|4665
8XSY|1|L5|G|4666

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LW

60S ribosomal protein L24

Chain Ld

60S ribosomal protein L31