IL_8XSY_262
3D structure
- PDB id
- 8XSY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSY_262 not in the Motif Atlas
- Homologous match to IL_8C3A_471
- Geometric discrepancy: 0.0663
- The information below is about IL_8C3A_471
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8XSY|1|S2|G|1702
8XSY|1|S2|C|1703
8XSY|1|S2|C|1704
8XSY|1|S2|C|1705
*
8XSY|1|S2|G|1829
8XSY|1|S2|U|1830
8XSY|1|S2|A|1831
8XSY|1|S2|A|1832
8XSY|1|S2|C|1833
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
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