IL_8XSZ_023

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

8XSZ|1|L5|U|467, 8XSZ|1|L5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XSZ|1|L5|A|466
8XSZ|1|L5|U|467
8XSZ|1|L5|U|468
8XSZ|1|L5|C|469
8XSZ|1|L5|A|470
8XSZ|1|L5|A|471
8XSZ|1|L5|C|472
*
8XSZ|1|L5|G|682
8XSZ|1|L5|C|683
8XSZ|1|L5|G|684
8XSZ|1|L5|C|685
8XSZ|1|L5|A|686
8XSZ|1|L5|U|687
8XSZ|1|L5|U|688
8XSZ|1|L5|U|689

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Lr

60S ribosomal protein L28