IL_8XSZ_053

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_053 not in the Motif Atlas

Geometric match to IL_5F5F_003

Geometric discrepancy: 0.2237

The information below is about IL_5F5F_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8XSZ|1|L5|G|1403
8XSZ|1|L5|G|1404
8XSZ|1|L5|C|1405
*
8XSZ|1|L5|G|1412
8XSZ|1|L5|C|1413
8XSZ|1|L5|C|1414

Current chains

Chain L5

28S rRNA

Nearby chains

Chain La

60S ribosomal protein L27a