IL_8XSZ_054

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_054 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2974

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8XSZ|1|L5|G|1425
8XSZ|1|L5|G|1426
8XSZ|1|L5|A|1427
8XSZ|1|L5|U|1428
8XSZ|1|L5|C|1429
*
8XSZ|1|L5|G|1455
8XSZ|1|L5|C|1456
8XSZ|1|L5|G|1457
8XSZ|1|L5|C|1458
8XSZ|1|L5|A|1459
8XSZ|1|L5|C|1460

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29