IL_8XSZ_085

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

8XSZ|1|L5|C|1935, 8XSZ|1|L5|A|2041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_085 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1884

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8XSZ|1|L5|G|1933
8XSZ|1|L5|A|1934
8XSZ|1|L5|C|1935
8XSZ|1|L5|C|1936
8XSZ|1|L5|C|1937
8XSZ|1|L5|C|1938
8XSZ|1|L5|A|1939
8XSZ|1|L5|G|1940
8XSZ|1|L5|A|1941
8XSZ|1|L5|A|1942
8XSZ|1|L5|A|1943
8XSZ|1|L5|A|1944
*
8XSZ|1|L5|U|2038
8XSZ|1|L5|G|2039
8XSZ|1|L5|A|2040
8XSZ|1|L5|A|2041
8XSZ|1|L5|A|2042
8XSZ|1|L5|A|2043
8XSZ|1|L5|U|2044
8XSZ|1|L5|G|2045
8XSZ|1|L5|G|2046
8XSZ|1|L5|A|2047
8XSZ|1|L5|U|2048
8XSZ|1|L5|G|2049
8XSZ|1|L5|G|2050
8XSZ|1|L5|C|2051
8XSZ|1|L5|G|2052
8XSZ|1|L5|C|2053

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LB

60S ribosomal protein L3

Chain LI

Large ribosomal subunit protein uL16

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a

Chain Lm

Ubiquitin-60S ribosomal protein L40