IL_8XSZ_115

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8XSZ|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_115 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.085

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8XSZ|1|L5|C|2867
8XSZ|1|L5|G|2868
8XSZ|1|L5|U|2869
8XSZ|1|L5|A|2870
8XSZ|1|L5|A|2871
8XSZ|1|L5|C|2872
*
8XSZ|1|L5|G|2877
8XSZ|1|L5|G|2878
8XSZ|1|L5|A|2879
8XSZ|1|L5|U|2880
8XSZ|1|L5|A|2881
8XSZ|1|L5|A|2882
8XSZ|1|L5|G|2883

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA