IL_8XSZ_125

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8XSZ|1|L5|A|3785, 8XSZ|1|L5|C|3791, 8XSZ|1|L5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_125 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0951

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8XSZ|1|L5|C|3781
8XSZ|1|L5|C|3782
8XSZ|1|L5|A|3783
8XSZ|1|L5|A|3784
8XSZ|1|L5|A|3785
8XSZ|1|L5|U|3786
8XSZ|1|L5|G|3787
8XSZ|1|L5|C|3788
8XSZ|1|L5|C|3789
8XSZ|1|L5|U|3790
8XSZ|1|L5|C|3791
8XSZ|1|L5|G|3792
*
8XSZ|1|L5|C|3808
8XSZ|1|L5|G|3809
8XSZ|1|L5|C|3810
8XSZ|1|L5|G|3811

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CD

Transfer RNA; tRNA

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA