IL_8XSZ_132

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAG*UCUGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_132 not in the Motif Atlas

Homologous match to IL_8C3A_102

Geometric discrepancy: 0.5517

The information below is about IL_8C3A_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8XSZ|1|L5|U|3950
8XSZ|1|L5|G|3951
8XSZ|1|L5|A|3952
8XSZ|1|L5|G|3953
*
8XSZ|1|L5|U|4058
8XSZ|1|L5|C|4059
8XSZ|1|L5|U|4060
8XSZ|1|L5|G|4061
8XSZ|1|L5|A|4062

Current chains

Chain L5

28S rRNA

Nearby chains