IL_8XSZ_159

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8XSZ|1|L5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_159 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.226

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8XSZ|1|L5|G|4680
8XSZ|1|L5|A|4681
8XSZ|1|L5|U|4682
8XSZ|1|L5|U|4683
8XSZ|1|L5|A|4684
8XSZ|1|L5|U|4685
*
8XSZ|1|L5|A|4705
8XSZ|1|L5|G|4706
8XSZ|1|L5|A|4707
8XSZ|1|L5|A|4708
8XSZ|1|L5|U|4709
8XSZ|1|L5|C|4710

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40