IL_8XSZ_285
3D structure
- PDB id
- 8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUUG*CCAAGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSZ_285 not in the Motif Atlas
- Homologous match to IL_8GLP_315
- Geometric discrepancy: 0.0742
- The information below is about IL_8GLP_315
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56912.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8XSZ|1|L5|C|4466
8XSZ|1|L5|A|4467
8XSZ|1|L5|U|4468
8XSZ|1|L5|U|4469
8XSZ|1|L5|G|4470
*
8XSZ|1|L5|C|4485
8XSZ|1|L5|C|4486
8XSZ|1|L5|A|4487
8XSZ|1|L5|A|4488
8XSZ|1|L5|G|4489
8XSZ|1|L5|C|4490
8XSZ|1|L5|G|4491
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LH
- 60S ribosomal protein L9
- Chain LO
- 60S ribosomal protein L13a
- Chain LV
- 60S ribosomal protein L23
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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