IL_8XT0_016
3D structure
- PDB id
- 8XT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAAA*UGAAC
- Length
- 10 nucleotides
- Bulged bases
- 8XT0|1|L1|A|581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT0_016 not in the Motif Atlas
- Homologous match to IL_7RQB_036
- Geometric discrepancy: 0.0695
- The information below is about IL_7RQB_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
8XT0|1|L1|G|479
8XT0|1|L1|U|480
8XT0|1|L1|A|481
8XT0|1|L1|A|482
8XT0|1|L1|A|483
*
8XT0|1|L1|U|578
8XT0|1|L1|G|579
8XT0|1|L1|A|580
8XT0|1|L1|A|581
8XT0|1|L1|C|582
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain L6
- Large ribosomal subunit protein mL63
- Chain LJ
- Large ribosomal subunit protein uL10m
- Chain LT
- Large ribosomal subunit protein bL20m
- Chain LU
- Large ribosomal subunit protein bL21m
- Chain Ld
- Large ribosomal subunit protein uL30m
- Chain Lz
- 39S ribosomal protein L52, mitochondrial
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