IL_8XT0_060
3D structure
- PDB id
- 8XT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAAA*UCA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT0_060 not in the Motif Atlas
- Geometric match to IL_7RQB_031
- Geometric discrepancy: 0.2139
- The information below is about IL_7RQB_031
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_46796.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
8XT0|1|S1|U|82
8XT0|1|S1|A|83
8XT0|1|S1|A|84
8XT0|1|S1|A|85
*
8XT0|1|S1|U|95
8XT0|1|S1|C|96
8XT0|1|S1|A|97
Current chains
- Chain S1
- 12s rRNA
Nearby chains
- Chain SP
- Small ribosomal subunit protein bS16m
- Chain SQ
- Small ribosomal subunit protein uS17m
- Chain Sb
- Small ribosomal subunit protein mS26
- Chain Sj
- Small ribosomal subunit protein mS34
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