IL_8XT0_065

3D structure

PDB id

8XT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT0_065 not in the Motif Atlas

Homologous match to IL_5J7L_018

Geometric discrepancy: 0.1512

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

8XT0|1|S1|G|187
8XT0|1|S1|C|188
8XT0|1|S1|A|189
8XT0|1|S1|A|190
8XT0|1|S1|U|191
*
8XT0|1|S1|A|205
8XT0|1|S1|C|206

Current chains

Chain S1

12s rRNA

Nearby chains

Chain SP

Small ribosomal subunit protein bS16m

Chain Sa

Small ribosomal subunit protein mS25

Chain Sb

Small ribosomal subunit protein mS26