IL_8XT0_086
3D structure
- PDB id
- 8XT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CG*UCAAG
- Length
- 7 nucleotides
- Bulged bases
- 8XT0|1|S1|C|683, 8XT0|1|S1|A|684
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT0_086 not in the Motif Atlas
- Homologous match to IL_6CZR_155
- Geometric discrepancy: 0.2652
- The information below is about IL_6CZR_155
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_95583.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
8XT0|1|S1|C|615
8XT0|1|S1|G|616
*
8XT0|1|S1|U|682
8XT0|1|S1|C|683
8XT0|1|S1|A|684
8XT0|1|S1|A|685
8XT0|1|S1|G|686
Current chains
- Chain S1
- 12s rRNA
Nearby chains
- Chain SE
- Small ribosomal subunit protein uS5m
- Chain SJ
- Small ribosomal subunit protein uS10m
- Chain SN
- Small ribosomal subunit protein uS14m
- Chain SZ
- Small ribosomal subunit protein uS3m
- Chain Si
- Small ribosomal subunit protein mS33
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