IL_8XT1_018

3D structure

PDB id

8XT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAG*CACC

Length

8 nucleotides

Bulged bases

8XT1|1|L1|A|502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT1_018 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.4057

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

8XT1|1|L1|G|500
8XT1|1|L1|U|501
8XT1|1|L1|A|502
8XT1|1|L1|G|503
*
8XT1|1|L1|C|517
8XT1|1|L1|A|518
8XT1|1|L1|C|519
8XT1|1|L1|C|520

Current chains

Chain L1

16s rRNA

Nearby chains

Chain L4

Large ribosomal subunit protein mL54

Chain LK

Large ribosomal subunit protein uL11m

Chain LP

Large ribosomal subunit protein uL16m