IL_8XT1_036

3D structure

PDB id

8XT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 5uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAU*AA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT1_036 not in the Motif Atlas

Geometric match to IL_7A0S_003

Geometric discrepancy: 0.2594

The information below is about IL_7A0S_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

8XT1|1|L1|U|1074
8XT1|1|L1|A|1075
8XT1|1|L1|U|1076
*
8XT1|1|L1|A|1132
8XT1|1|L1|A|1133

Current chains

Chain L1

16s rRNA

Nearby chains

Chain Lb

Large ribosomal subunit protein bL28m