IL_8XT2_007

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8XT2|1|L1|G|341, 8XT2|1|L1|G|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_007 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1286

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8XT2|1|L1|G|236
8XT2|1|L1|A|237
8XT2|1|L1|A|238
8XT2|1|L1|A|239
8XT2|1|L1|C|240
*
8XT2|1|L1|G|339
8XT2|1|L1|U|340
8XT2|1|L1|G|341
8XT2|1|L1|A|342
8XT2|1|L1|U|343
8XT2|1|L1|A|344
8XT2|1|L1|G|345
8XT2|1|L1|C|346

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL4m

Chain LO

Large ribosomal subunit protein uL15m

Chain Ly

Large ribosomal subunit protein mL51