IL_8XT2_012
3D structure
- PDB id
- 8XT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAG*CUACC
- Length
- 8 nucleotides
- Bulged bases
- 8XT2|1|L1|A|316, 8XT2|1|L1|U|328, 8XT2|1|L1|A|329, 8XT2|1|L1|C|330
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT2_012 not in the Motif Atlas
- Geometric match to IL_5J7L_265
- Geometric discrepancy: 0.077
- The information below is about IL_5J7L_265
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_06549.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8XT2|1|L1|G|315
8XT2|1|L1|A|316
8XT2|1|L1|G|317
*
8XT2|1|L1|C|327
8XT2|1|L1|U|328
8XT2|1|L1|A|329
8XT2|1|L1|C|330
8XT2|1|L1|C|331
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL2m
- Chain LD
- Large ribosomal subunit protein uL4m
- Chain LV
- 39S ribosomal protein L22, mitochondrial
- Chain Lh
- Large ribosomal subunit protein bL34m
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