IL_8XT2_030

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GUAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_030 not in the Motif Atlas

Homologous match to IL_5J7L_318

Geometric discrepancy: 0.211

The information below is about IL_5J7L_318

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8XT2|1|L1|G|926
8XT2|1|L1|C|927
*
8XT2|1|L1|G|957
8XT2|1|L1|U|958
8XT2|1|L1|A|959
8XT2|1|L1|U|960

Current chains

Chain L1

16s rRNA

Nearby chains

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain Sn

Small ribosomal subunit protein mS38