IL_8XT2_032

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAA*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_032 not in the Motif Atlas

Geometric match to IL_5TBW_091

Geometric discrepancy: 0.2429

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8XT2|1|L1|G|1042
8XT2|1|L1|C|1043
8XT2|1|L1|A|1044
8XT2|1|L1|A|1045
*
8XT2|1|L1|U|1434
8XT2|1|L1|A|1435
8XT2|1|L1|C|1436

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LM

Large ribosomal subunit protein uL13m

Chain Lf

Large ribosomal subunit protein bL32m