IL_8XT2_061
3D structure
- PDB id
- 8XT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUCAA*UCAAAACG
- Length
- 14 nucleotides
- Bulged bases
- 8XT2|1|S1|U|111, 8XT2|1|S1|A|135
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT2_061 not in the Motif Atlas
- Geometric match to IL_6CZR_123
- Geometric discrepancy: 0.139
- The information below is about IL_6CZR_123
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.2
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8XT2|1|S1|C|109
8XT2|1|S1|A|110
8XT2|1|S1|U|111
8XT2|1|S1|C|112
8XT2|1|S1|A|113
8XT2|1|S1|A|114
*
8XT2|1|S1|U|132
8XT2|1|S1|C|133
8XT2|1|S1|A|134
8XT2|1|S1|A|135
8XT2|1|S1|A|136
8XT2|1|S1|A|137
8XT2|1|S1|C|138
8XT2|1|S1|G|139
Current chains
- Chain S1
- 12s rRNA
Nearby chains
- Chain SL
- Small ribosomal subunit protein uS12m
- Chain SO
- Small ribosomal subunit protein uS15m
- Chain SQ
- Small ribosomal subunit protein uS17m
- Chain Sn
- Small ribosomal subunit protein mS38
Coloring options: