IL_8XT2_091

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*CAUG

Length

7 nucleotides

Bulged bases

8XT2|1|S1|C|837, 8XT2|1|S1|U|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_091 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1674

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8XT2|1|S1|C|836
8XT2|1|S1|C|837
8XT2|1|S1|G|838
*
8XT2|1|S1|C|919
8XT2|1|S1|A|920
8XT2|1|S1|U|921
8XT2|1|S1|G|922

Current chains

Chain S1

12s rRNA

Nearby chains

Chain Sn

Small ribosomal subunit protein mS38