IL_8XT2_096

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_096 not in the Motif Atlas

Geometric match to IL_5TBW_128

Geometric discrepancy: 0.1574

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8XT2|1|S1|A|860
8XT2|1|S1|C|861
8XT2|1|S1|U|862
8XT2|1|S1|U|863
*
8XT2|1|S1|A|893
8XT2|1|S1|U|894
8XT2|1|S1|U|895
8XT2|1|S1|U|896

Current chains

Chain S1

12s rRNA

Nearby chains

Chain LN

Large ribosomal subunit protein uL14m

Chain Sj

Small ribosomal subunit protein mS34

Chain Sn

Small ribosomal subunit protein mS38