IL_8XT2_103

3D structure

PDB id

8XT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT2_103 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.069

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8XT2|1|L1|G|800
8XT2|1|L1|G|801
8XT2|1|L1|A|802
8XT2|1|L1|A|803
8XT2|1|L1|C|804
8XT2|1|L1|U|805
8XT2|1|L1|C|806
8XT2|1|L1|G|807
8XT2|1|L1|G|808
*
8XT2|1|L1|C|983
8XT2|1|L1|U|984
8XT2|1|L1|G|985
8XT2|1|L1|U|986
8XT2|1|L1|C|987

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LN

Large ribosomal subunit protein uL14m

Chain LS

Large ribosomal subunit protein bL19m