IL_8XT3_029

3D structure

PDB id

8XT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCAA*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT3_029 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.2463

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

8XT3|1|L1|G|1042
8XT3|1|L1|C|1043
8XT3|1|L1|A|1044
8XT3|1|L1|A|1045
*
8XT3|1|L1|U|1434
8XT3|1|L1|A|1435
8XT3|1|L1|C|1436

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LM

Large ribosomal subunit protein uL13m

Chain Lf

Large ribosomal subunit protein bL32m