IL_8XT3_056
3D structure
- PDB id
- 8XT3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAACUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT3_056 not in the Motif Atlas
- Geometric match to IL_4WF9_117
- Geometric discrepancy: 0.0793
- The information below is about IL_4WF9_117
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
8XT3|1|L1|G|800
8XT3|1|L1|G|801
8XT3|1|L1|A|802
8XT3|1|L1|A|803
8XT3|1|L1|C|804
8XT3|1|L1|U|805
8XT3|1|L1|C|806
8XT3|1|L1|G|807
8XT3|1|L1|G|808
*
8XT3|1|L1|C|983
8XT3|1|L1|U|984
8XT3|1|L1|G|985
8XT3|1|L1|U|986
8XT3|1|L1|C|987
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL3m
- Chain LN
- Large ribosomal subunit protein uL14m
- Chain LS
- Large ribosomal subunit protein bL19m
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