IL_8XU8_023
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCAAU*AG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_023 not in the Motif Atlas
- Homologous match to IL_8C3A_416
- Geometric discrepancy: 0.181
- The information below is about IL_8C3A_416
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_03109.1
- Basepair signature
- cWW-cSH-cWS-tWH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8XU8|1|2|C|443
8XU8|1|2|C|444
8XU8|1|2|A|445
8XU8|1|2|A|446
8XU8|1|2|U|447
*
8XU8|1|2|A|460
8XU8|1|2|G|461
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sd
- Small ribosomal subunit protein eS24A
- Chain x
- Elongation factor 2
Coloring options: