IL_8XU8_030

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

8XU8|1|2|A|555, 8XU8|1|2|A|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_030 not in the Motif Atlas

Homologous match to IL_8C3A_423

Geometric discrepancy: 0.4122

The information below is about IL_8C3A_423

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8XU8|1|2|A|550
8XU8|1|2|G|551
8XU8|1|2|G|552
8XU8|1|2|G|553
8XU8|1|2|C|554
8XU8|1|2|A|555
8XU8|1|2|A|556
8XU8|1|2|G|557
*
8XU8|1|2|C|587
8XU8|1|2|U|588

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein uS5

Chain SW

Small ribosomal subunit protein uS4A

Chain Sg

Small ribosomal subunit protein eS30A