IL_8XU8_041

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

8XU8|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_041 not in the Motif Atlas

Geometric match to IL_8C3A_455

Geometric discrepancy: 0.3885

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8XU8|1|2|G|868
8XU8|1|2|A|869
*
8XU8|1|2|U|958
8XU8|1|2|U|959
8XU8|1|2|U|960

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SY

Small ribosomal subunit protein uS15

Chain Sb

Small ribosomal subunit protein uS8A

Chain Sf

Small ribosomal subunit protein eS27A