IL_8XU8_055

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_055 not in the Motif Atlas

Homologous match to IL_8C3A_450

Geometric discrepancy: 0.1651

The information below is about IL_8C3A_450

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

8XU8|1|2|C|1173
8XU8|1|2|C|1174
8XU8|1|2|U|1175
*
8XU8|1|2|G|1464
8XU8|1|2|C|1465
8XU8|1|2|G|1466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS9A

Chain SH

Small ribosomal subunit protein uS13A

Chain SI

Small ribosomal subunit protein eS19A

Chain t

Transfer RNA; tRNA