IL_8XU8_070

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUA*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_070 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.278

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8XU8|1|2|C|1355
8XU8|1|2|U|1356
8XU8|1|2|A|1357
*
8XU8|1|2|U|1366
8XU8|1|2|G|1367
8XU8|1|2|G|1368

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS9A

Chain SI

Small ribosomal subunit protein eS19A