IL_8XU8_085

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_085 not in the Motif Atlas

Homologous match to IL_8P9A_461

Geometric discrepancy: 0.2951

The information below is about IL_8P9A_461

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8XU8|1|2|G|1672
8XU8|1|2|G|1673
8XU8|1|2|C|1674
*
8XU8|1|2|G|1727
8XU8|1|2|A|1728
8XU8|1|2|C|1729

Current chains

Chain 2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS6A

Chain SV

Small ribosomal subunit protein eS8A

Chain Y

Large ribosomal subunit protein eL24A