IL_8XU8_094
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_094 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.143
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8XU8|1|A|C|82
8XU8|1|A|U|83
8XU8|1|A|U|84
8XU8|1|A|A|85
8XU8|1|A|G|86
8XU8|1|A|U|87
8XU8|1|A|A|88
8XU8|1|A|A|89
*
8XU8|1|A|U|97
8XU8|1|A|G|98
8XU8|1|A|A|99
8XU8|1|A|A|100
8XU8|1|A|G|101
8XU8|1|A|C|102
8XU8|1|A|G|103
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain N
- Large ribosomal subunit protein eL13A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain S
- Large ribosomal subunit protein eL18A
- Chain c
- Large ribosomal subunit protein uL15
Coloring options: