IL_8XU8_128

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_128 not in the Motif Atlas

Homologous match to IL_8P9A_269

Geometric discrepancy: 0.1431

The information below is about IL_8P9A_269

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8XU8|1|A|A|1006
8XU8|1|A|U|1007
8XU8|1|A|U|1008
8XU8|1|A|A|1009
*
8XU8|1|A|U|1041
8XU8|1|A|U|1042
8XU8|1|A|C|1043
8XU8|1|A|U|1044

Current chains

Chain A

25S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL18

Chain L

Large ribosomal subunit protein uL16