IL_8XU8_173

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_173 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1233

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8XU8|1|A|U|2211
8XU8|1|A|C|2212
8XU8|1|A|A|2213
8XU8|1|A|A|2214
8XU8|1|A|A|2215
8XU8|1|A|G|2216
8XU8|1|A|U|2217
*
8XU8|1|A|A|2228
8XU8|1|A|A|2229
8XU8|1|A|C|2230
8XU8|1|A|C|2231
8XU8|1|A|A|2232
8XU8|1|A|A|2233
8XU8|1|A|G|2234

Current chains

Chain A

25S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein eL36A