IL_8XU8_175

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8XU8|1|A|A|2281, 8XU8|1|A|C|2287, 8XU8|1|A|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_175 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1844

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8XU8|1|A|C|2277
8XU8|1|A|C|2278
8XU8|1|A|A|2279
8XU8|1|A|A|2280
8XU8|1|A|A|2281
8XU8|1|A|U|2282
8XU8|1|A|G|2283
8XU8|1|A|C|2284
8XU8|1|A|C|2285
8XU8|1|A|U|2286
8XU8|1|A|C|2287
8XU8|1|A|G|2288
*
8XU8|1|A|C|2304
8XU8|1|A|G|2305
8XU8|1|A|C|2306
8XU8|1|A|G|2307

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain p

Large ribosomal subunit protein eL41A

Chain s

Transfer RNA; tRNA