IL_8XU8_189
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUCCC*GGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_189 not in the Motif Atlas
- Geometric match to IL_8C3A_070
- Geometric discrepancy: 0.2447
- The information below is about IL_8C3A_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15698.1
- Basepair signature
- cWW-tSH-cSH-cWW
- Number of instances in this motif group
- 9
Unit IDs
8XU8|1|A|G|2770
8XU8|1|A|U|2771
8XU8|1|A|C|2772
8XU8|1|A|C|2773
8XU8|1|A|C|2774
*
8XU8|1|A|G|2786
8XU8|1|A|G|2787
8XU8|1|A|C|2788
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain N
- Large ribosomal subunit protein eL13A
- Chain S
- Large ribosomal subunit protein eL18A
- Chain c
- Large ribosomal subunit protein uL15
- Chain q
- Large ribosomal subunit protein eL42A
Coloring options: