IL_8XU8_192

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8XU8|1|A|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_192 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.2514

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8XU8|1|A|G|2828
8XU8|1|A|U|2829
8XU8|1|A|G|2830
*
8XU8|1|A|U|2858
8XU8|1|A|U|2859
8XU8|1|A|U|2860
8XU8|1|A|U|2861
8XU8|1|A|U|2862

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain L

Large ribosomal subunit protein uL16

Chain s

Transfer RNA; tRNA