IL_8XU8_195

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8XU8|1|A|G|2945, 8XU8|1|A|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_195 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.1159

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8XU8|1|A|C|2879
8XU8|1|A|U|2880
8XU8|1|A|C|2881
*
8XU8|1|A|G|2943
8XU8|1|A|U|2944
8XU8|1|A|G|2945
8XU8|1|A|A|2946
8XU8|1|A|G|2947

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain X

Large ribosomal subunit protein uL14A