IL_8XU8_207

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CAUUG

Length

8 nucleotides

Bulged bases

8XU8|1|A|U|3078, 8XU8|1|A|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_207 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.2537

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8XU8|1|A|C|3063
8XU8|1|A|U|3064
8XU8|1|A|G|3065
*
8XU8|1|A|C|3076
8XU8|1|A|A|3077
8XU8|1|A|U|3078
8XU8|1|A|U|3079
8XU8|1|A|G|3080

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein eL19A

Chain f

Large ribosomal subunit protein eL31A