IL_8XU8_217

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_217 not in the Motif Atlas

Homologous match to IL_8P9A_356

Geometric discrepancy: 0.2427

The information below is about IL_8P9A_356

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8XU8|1|A|U|3300
8XU8|1|A|U|3301
8XU8|1|A|U|3302
8XU8|1|A|G|3303
*
8XU8|1|A|C|3311
8XU8|1|A|U|3312
8XU8|1|A|U|3313
8XU8|1|A|A|3314

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain R

Large ribosomal subunit protein uL22A

Chain f

Large ribosomal subunit protein eL31A