IL_8XU8_223

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_223 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.3836

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8XU8|1|A|A|3342
8XU8|1|A|G|3343
8XU8|1|A|A|3344
8XU8|1|A|G|3345
*
8XU8|1|A|C|3360
8XU8|1|A|G|3361
8XU8|1|A|A|3362
8XU8|1|A|U|3363

Current chains

Chain A

25S rRNA

Nearby chains

Chain SV

Small ribosomal subunit protein eS8A

Chain T

Large ribosomal subunit protein eL19A

Chain W

Large ribosomal subunit protein eL22A