IL_8XU8_244

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

8XU8|1|A|U|3078, 8XU8|1|A|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_244 not in the Motif Atlas

Homologous match to IL_8P9A_347

Geometric discrepancy: 0.2434

The information below is about IL_8P9A_347

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XU8|1|A|C|3063
8XU8|1|A|U|3064
*
8XU8|1|A|A|3077
8XU8|1|A|U|3078
8XU8|1|A|U|3079
8XU8|1|A|G|3080

Current chains

Chain A

25S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein eL19A

Chain f

Large ribosomal subunit protein eL31A