IL_8XXL_037

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

8XXL|1|S2|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXL_037 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1254

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8XXL|1|S2|G|665
8XXL|1|S2|U|666
8XXL|1|S2|U|667
8XXL|1|S2|A|668
8XXL|1|S2|A|669
8XXL|1|S2|A|670
8XXL|1|S2|A|671
*
8XXL|1|S2|U|1161
8XXL|1|S2|C|1162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SX

40S ribosomal protein S23

Chain Sa

40S ribosomal protein S26