IL_8XXL_039
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XXL_039 not in the Motif Atlas
- Homologous match to IL_8C3A_428
- Geometric discrepancy: 0.0762
- The information below is about IL_8C3A_428
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8XXL|1|S2|C|676
8XXL|1|S2|G|677
8XXL|1|S2|U|678
8XXL|1|S2|A|679
8XXL|1|S2|G|680
*
8XXL|1|S2|U|1025
8XXL|1|S2|C|1026
8XXL|1|S2|A|1027
8XXL|1|S2|A|1028
8XXL|1|S2|G|1029
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
Coloring options: