IL_8XXL_077

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

8XXL|1|S2|C|1403, 8XXL|1|S2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXL_077 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1124

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8XXL|1|S2|A|1402
8XXL|1|S2|C|1403
8XXL|1|S2|U|1404
8XXL|1|S2|A|1405
*
8XXL|1|S2|U|1441
8XXL|1|S2|U|1442
8XXL|1|S2|C|1443
8XXL|1|S2|U|1444

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20