IL_8XXL_084

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8XXL|1|S2|C|1701, 8XXL|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXL_084 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0894

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8XXL|1|S2|C|1700
8XXL|1|S2|C|1701
8XXL|1|S2|G|1702
*
8XXL|1|S2|C|1833
8XXL|1|S2|A|1834
8XXL|1|S2|A|1835
8XXL|1|S2|G|1836

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

Programmed cell death protein 4

Chain SC

40S ribosomal protein S2

Chain Sa

40S ribosomal protein S26