IL_8XXL_085

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXL_085 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.103

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8XXL|1|S2|G|1702
8XXL|1|S2|C|1703
8XXL|1|S2|C|1704
8XXL|1|S2|C|1705
*
8XXL|1|S2|G|1829
8XXL|1|S2|U|1830
8XXL|1|S2|A|1831
8XXL|1|S2|A|1832
8XXL|1|S2|C|1833

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

Programmed cell death protein 4

Chain Ln

60S ribosomal protein L41